/EXTERNAL BLUEPRINT/mapping_coverage/K011972_K011976_K012000_K012001_4_lane_gembs
BACK
SAMPLE K011972_K011976_K012000_K012001_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
123349007 |
100% |
8510553162 |
100% |
| Mapped |
121351223 |
98.38 % |
8358721578 |
98.22 % |
| Passed |
72492739 |
58.77 % |
4645476794 |
54.58 % |
| NotPassed |
48858484 |
39.61 % |
3713244784 |
43.63 % |
| |
|
|
|
|
| LowMAPQ |
29243936 |
23.71 % |
2222539136 |
26.12 % |
| MateUnmapped |
1997784 |
1.62 % |
151831584 |
1.78 % |
| Duplicate |
18194104 |
14.75 % |
1382751904 |
16.25 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
8242 |
0.01 % |
626392 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1412198 |
1.14 % |
107327048 |
1.26 % |
| Unmapped |
1997784 |
1.62 % |
151831584 |
1.78 % |
Base Level Counts
| Bases |
# |
% |
| Total |
5206965048 |
100% |
| Passed |
4217139898 |
80.99 % |
| Trimmed |
303732375 |
5.83 % |
| Clipped |
17442800 |
0.33 % |
| Overlapping |
544045454 |
10.45 % |
| LowQuality |
124604521 |
2.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |