/EXTERNAL BLUEPRINT/methylation/K011972_K011976_K012000_K012001_4_lane_gembs
BACK
SAMPLE K011972_K011976_K012000_K012001_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
19767667 |
78209 |
0.40 % |
| NonRefCpG |
907663 |
180 |
0.02 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
3690747 |
13.55 % |
5445 |
2.71 % |
320529 |
28.08 % |
90 |
7.93 % |
| Intermediate (0.3-0.7) |
9372964 |
34.40 % |
35929 |
17.87 % |
422610 |
37.02 % |
261 |
22.78 % |
| Methylated (0.7-1) |
14180624 |
52.05 % |
159673 |
79.42 % |
398348 |
34.90 % |
794 |
69.29 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.710 |
|
0.870 |
|
0.540 |
|
0.830 |
|