/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012002_1894944_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012002_1894944_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 125902742 | 100.00 % | 62951371 | 100.00 % | 62951371 | 100.00 % |
| General Reads | 120263697 | 95.52 % | 60752716 | 96.51 % | 59510981 | 94.53 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 5 | 0.00 % | 2 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5639040 | 4.48 % | 2198653 | 3.49 % | 3440387 | 5.47 % |
| Bisulfite_reads C2T | 62239951 | 49.43 % | 31432550 | 49.93 % | 30807401 | 48.94 % |
| Bisulfite_reads G2A | 58023751 | 46.09 % | 29320168 | 46.58 % | 28703583 | 45.60 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 45575049 |
| Average Unique | 72.40 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3461713948 | 36.18 % | 1341056784 | 28.03 % | 2120657164 | 44.33 % |
| Base Counts Overall C | 1261377885 | 13.18 % | 127110832 | 2.66 % | 1134267053 | 23.71 % |
| Base Counts Overall G | 1328688189 | 13.89 % | 1168742692 | 24.43 % | 159945497 | 3.34 % |
| Base Counts Overall T | 3384885070 | 35.37 % | 2084300698 | 43.57 % | 1300584372 | 27.18 % |
| Base Counts Overall N | 131943300 | 1.38 % | 63093190 | 1.32 % | 68850110 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 56842828 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 62951371 |
| 75 | 62951371 |
Insert Size Plot
| Insert Size Histogram |
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