/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012003_1894945_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012003_1894945_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 12824282 | 100.00 % | 6412141 | 100.00 % | 6412141 | 100.00 % |
| General Reads | 6973638 | 54.38 % | 3526594 | 55.00 % | 3447044 | 53.76 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 8 | 0.00 % | 4 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5850636 | 45.62 % | 2885543 | 45.00 % | 2965093 | 46.24 % |
| Bisulfite_reads C2T | 3610243 | 28.15 % | 1825365 | 28.47 % | 1784878 | 27.84 % |
| Bisulfite_reads G2A | 3363403 | 26.23 % | 1701233 | 26.53 % | 1662170 | 25.92 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2655849 |
| Average Unique | 41.42 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 302554846 | 31.04 % | 130738161 | 26.83 % | 171816685 | 35.26 % |
| Base Counts Overall C | 173231082 | 17.77 % | 61438008 | 12.61 % | 111793074 | 22.94 % |
| Base Counts Overall G | 184260862 | 18.91 % | 116379786 | 23.88 % | 67881076 | 13.93 % |
| Base Counts Overall T | 301145624 | 30.90 % | 172339912 | 35.36 % | 128805712 | 26.43 % |
| Base Counts Overall N | 13453018 | 1.38 % | 6426849 | 1.32 % | 7026169 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3314368 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 6412141 |
| 75 | 6412141 |
Insert Size Plot
| Insert Size Histogram |
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