/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012004_1894946_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012004_1894946_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18801146 | 100.00 % | 9400573 | 100.00 % | 9400573 | 100.00 % |
| General Reads | 15442269 | 82.13 % | 7839659 | 83.40 % | 7602610 | 80.87 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 14 | 0.00 % | 7 | 0.00 % | 7 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3358863 | 17.87 % | 1560907 | 16.60 % | 1797956 | 19.13 % |
| Bisulfite_reads C2T | 7969705 | 42.39 % | 4044139 | 43.02 % | 3925566 | 41.76 % |
| Bisulfite_reads G2A | 7472578 | 39.75 % | 3795527 | 40.38 % | 3677051 | 39.12 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5990659 |
| Average Unique | 63.73 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 450018582 | 31.49 % | 198195519 | 27.74 % | 251823063 | 35.25 % |
| Base Counts Overall C | 246197137 | 17.23 % | 83458733 | 11.68 % | 162738404 | 22.78 % |
| Base Counts Overall G | 262601681 | 18.38 % | 169206828 | 23.68 % | 93394853 | 13.07 % |
| Base Counts Overall T | 450378240 | 31.52 % | 254160699 | 35.57 % | 196217541 | 27.46 % |
| Base Counts Overall N | 19691456 | 1.38 % | 9421769 | 1.32 % | 10269687 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7414334 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9400573 |
| 75 | 9400573 |
Insert Size Plot
| Insert Size Histogram |
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