/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012005_1894947_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012005_1894947_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 20997240 | 100.00 % | 10498620 | 100.00 % | 10498620 | 100.00 % |
| General Reads | 14459275 | 68.86 % | 7324146 | 69.76 % | 7135129 | 67.96 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1 | 0.00 % | 1 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6537964 | 31.14 % | 3174473 | 30.24 % | 3363491 | 32.04 % |
| Bisulfite_reads C2T | 7479810 | 35.62 % | 3787607 | 36.08 % | 3692203 | 35.17 % |
| Bisulfite_reads G2A | 6979466 | 33.24 % | 3536540 | 33.69 % | 3442926 | 32.79 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5552347 |
| Average Unique | 52.89 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 496210415 | 31.09 % | 215522310 | 27.01 % | 280688105 | 35.18 % |
| Base Counts Overall C | 282359059 | 17.69 % | 96733605 | 12.12 % | 185625454 | 23.26 % |
| Base Counts Overall G | 300195129 | 18.81 % | 193387930 | 24.24 % | 106807199 | 13.39 % |
| Base Counts Overall T | 495024085 | 31.02 % | 281729169 | 35.31 % | 213294916 | 26.73 % |
| Base Counts Overall N | 22001552 | 1.38 % | 10522106 | 1.32 % | 11479446 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6901667 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 10498620 |
| 75 | 10498620 |
Insert Size Plot
| Insert Size Histogram |
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