/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012006_1894948_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012006_1894948_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17194100 | 100.00 % | 8597050 | 100.00 % | 8597050 | 100.00 % |
| General Reads | 7150385 | 41.59 % | 3622733 | 42.14 % | 3527652 | 41.03 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 3 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 10043709 | 58.41 % | 4974314 | 57.86 % | 5069395 | 58.97 % |
| Bisulfite_reads C2T | 3705767 | 21.55 % | 1876513 | 21.83 % | 1829254 | 21.28 % |
| Bisulfite_reads G2A | 3444624 | 20.03 % | 1746223 | 20.31 % | 1698401 | 19.76 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2650294 |
| Average Unique | 30.83 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 394305680 | 30.17 % | 179802943 | 27.52 % | 214502737 | 32.83 % |
| Base Counts Overall C | 240738402 | 18.42 % | 93447103 | 14.30 % | 147291299 | 22.54 % |
| Base Counts Overall G | 257246463 | 19.69 % | 153750737 | 23.53 % | 103495726 | 15.84 % |
| Base Counts Overall T | 396440811 | 30.34 % | 217758983 | 33.33 % | 178681828 | 27.35 % |
| Base Counts Overall N | 18020244 | 1.38 % | 8616034 | 1.32 % | 9404210 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3354499 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 8597050 |
| 75 | 8597050 |
Insert Size Plot
| Insert Size Histogram |
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