/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012007_1894949_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012007_1894949_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 19736146 | 100.00 % | 9868073 | 100.00 % | 9868073 | 100.00 % |
| General Reads | 10598626 | 53.70 % | 5605886 | 56.81 % | 4992740 | 50.59 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 2 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 9137516 | 46.30 % | 4262185 | 43.19 % | 4875331 | 49.41 % |
| Bisulfite_reads C2T | 6177245 | 31.30 % | 3259519 | 33.03 % | 2917726 | 29.57 % |
| Bisulfite_reads G2A | 4421385 | 22.40 % | 2346369 | 23.78 % | 2075016 | 21.03 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3201927 |
| Average Unique | 32.45 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 446427891 | 29.76 % | 191194157 | 25.49 % | 255233734 | 34.03 % |
| Base Counts Overall C | 287072038 | 19.14 % | 91975556 | 12.26 % | 195096482 | 26.01 % |
| Base Counts Overall G | 299075027 | 19.94 % | 199531769 | 26.61 % | 99543258 | 13.27 % |
| Base Counts Overall T | 446700359 | 29.78 % | 257382100 | 34.32 % | 189318259 | 25.24 % |
| Base Counts Overall N | 20671781 | 1.38 % | 9889966 | 1.32 % | 10781815 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4400821 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9868073 |
| 75 | 9868073 |
Insert Size Plot
| Insert Size Histogram |
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