/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012008_1894950_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012008_1894950_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16776398 | 100.00 % | 8388199 | 100.00 % | 8388199 | 100.00 % |
| General Reads | 10298336 | 61.39 % | 5206849 | 62.07 % | 5091487 | 60.70 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 11 | 0.00 % | 5 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6478051 | 38.61 % | 3181345 | 37.93 % | 3296706 | 39.30 % |
| Bisulfite_reads C2T | 5325070 | 31.74 % | 2691609 | 32.09 % | 2633461 | 31.39 % |
| Bisulfite_reads G2A | 4973277 | 29.64 % | 2515245 | 29.99 % | 2458032 | 29.30 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3947431 |
| Average Unique | 47.06 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 389887899 | 30.58 % | 165524585 | 25.96 % | 224363314 | 35.19 % |
| Base Counts Overall C | 232387123 | 18.23 % | 81100114 | 12.72 % | 151287009 | 23.73 % |
| Base Counts Overall G | 246863894 | 19.36 % | 157792776 | 24.75 % | 89071118 | 13.97 % |
| Base Counts Overall T | 388282687 | 30.45 % | 224678179 | 35.24 % | 163604508 | 25.66 % |
| Base Counts Overall N | 17584645 | 1.38 % | 8407470 | 1.32 % | 9177175 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4920362 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 8388199 |
| 75 | 8388199 |
Insert Size Plot
| Insert Size Histogram |
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