/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012009_1894951_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012009_1894951_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18716852 | 100.00 % | 9358426 | 100.00 % | 9358426 | 100.00 % |
| General Reads | 12201020 | 65.19 % | 6168414 | 65.91 % | 6032606 | 64.46 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 8 | 0.00 % | 4 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6515824 | 34.81 % | 3190008 | 34.09 % | 3325816 | 35.54 % |
| Bisulfite_reads C2T | 6310352 | 33.71 % | 3189323 | 34.08 % | 3121029 | 33.35 % |
| Bisulfite_reads G2A | 5890676 | 31.47 % | 2979095 | 31.83 % | 2911581 | 31.11 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4662691 |
| Average Unique | 49.82 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 448893845 | 31.56 % | 187364929 | 26.34 % | 261528916 | 36.77 % |
| Base Counts Overall C | 245617666 | 17.27 % | 77378676 | 10.88 % | 168238990 | 23.65 % |
| Base Counts Overall G | 261459448 | 18.38 % | 175188203 | 24.63 % | 86271245 | 12.13 % |
| Base Counts Overall T | 446902324 | 31.42 % | 261928739 | 36.83 % | 184973585 | 26.01 % |
| Base Counts Overall N | 19607469 | 1.38 % | 9379829 | 1.32 % | 10227640 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5817004 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9358426 |
| 75 | 9358426 |
Insert Size Plot
| Insert Size Histogram |
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