/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012010_1894952_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012010_1894952_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15293816 | 100.00 % | 7646908 | 100.00 % | 7646908 | 100.00 % |
| General Reads | 9954953 | 65.09 % | 5041270 | 65.93 % | 4913683 | 64.26 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 2 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5338859 | 34.91 % | 2605636 | 34.07 % | 2733223 | 35.74 % |
| Bisulfite_reads C2T | 5153260 | 33.70 % | 2608861 | 34.12 % | 2544399 | 33.27 % |
| Bisulfite_reads G2A | 4801697 | 31.40 % | 2432411 | 31.81 % | 2369286 | 30.98 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3796590 |
| Average Unique | 49.65 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 369413973 | 31.78 % | 155308686 | 26.72 % | 214105287 | 36.84 % |
| Base Counts Overall C | 198092758 | 17.04 % | 60841194 | 10.47 % | 137251564 | 23.62 % |
| Base Counts Overall G | 210319239 | 18.09 % | 142501357 | 24.52 % | 67817882 | 11.67 % |
| Base Counts Overall T | 368479694 | 31.70 % | 214849616 | 36.97 % | 153630078 | 26.43 % |
| Base Counts Overall N | 16024352 | 1.38 % | 7664155 | 1.32 % | 8360197 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4736760 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 7646908 |
| 75 | 7646908 |
Insert Size Plot
| Insert Size Histogram |
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