/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012011_1894953_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012011_1894953_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 46783512 | 100.00 % | 23391756 | 100.00 % | 23391756 | 100.00 % |
| General Reads | 41219730 | 88.11 % | 20858059 | 89.17 % | 20361671 | 87.05 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 3 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5563776 | 11.89 % | 2533694 | 10.83 % | 3030082 | 12.95 % |
| Bisulfite_reads C2T | 21300300 | 45.53 % | 10775228 | 46.06 % | 10525072 | 44.99 % |
| Bisulfite_reads G2A | 19919436 | 42.58 % | 10082834 | 43.10 % | 9836602 | 42.05 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 15780730 |
| Average Unique | 67.46 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1227819817 | 34.53 % | 489374202 | 27.53 % | 738445615 | 41.54 % |
| Base Counts Overall C | 514674960 | 14.48 % | 91620829 | 5.15 % | 423054131 | 23.80 % |
| Base Counts Overall G | 546277198 | 15.36 % | 438511073 | 24.67 % | 107766125 | 6.06 % |
| Base Counts Overall T | 1217732241 | 34.25 % | 734823116 | 41.33 % | 482909125 | 27.16 % |
| Base Counts Overall N | 49042696 | 1.38 % | 23444236 | 1.32 % | 25598460 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 19648437 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 23391756 |
| 75 | 23391756 |
Insert Size Plot
| Insert Size Histogram |
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