/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs/EXTERNAL-K012012_1894954_2
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs LANE EXTERNAL-K012012_1894954_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 38952166 | 100.00 % | 19476083 | 100.00 % | 19476083 | 100.00 % |
| General Reads | 33426167 | 85.81 % | 16901407 | 86.78 % | 16524760 | 84.85 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 7 | 0.00 % | 3 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5525992 | 14.19 % | 2574673 | 13.22 % | 2951319 | 15.15 % |
| Bisulfite_reads C2T | 17288964 | 44.39 % | 8739374 | 44.87 % | 8549590 | 43.90 % |
| Bisulfite_reads G2A | 16137210 | 41.43 % | 8162036 | 41.91 % | 7975174 | 40.95 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 12692966 |
| Average Unique | 65.17 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1017278346 | 34.36 % | 407583206 | 27.54 % | 609695140 | 41.19 % |
| Base Counts Overall C | 435069672 | 14.70 % | 82641361 | 5.58 % | 352428311 | 23.81 % |
| Base Counts Overall G | 460383533 | 15.55 % | 364321772 | 24.61 % | 96061761 | 6.49 % |
| Base Counts Overall T | 1006828052 | 34.01 % | 606116968 | 40.95 % | 400711084 | 27.07 % |
| Base Counts Overall N | 40805013 | 1.38 % | 19519001 | 1.32 % | 21286012 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 15899723 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 19476083 |
| 75 | 19476083 |
Insert Size Plot
| Insert Size Histogram |
 |