/EXTERNAL BLUEPRINT/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs

BACK

SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	351978400	100.00 %	175989200	100.00 %	175989200	100.00 %
General Reads	281988096	80.12 %	142847733	81.17 %	139140363	79.06 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	74	0.00 %	36	0.00 %	38	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	69990230	19.88 %	33141431	18.83 %	36848799	20.94 %
Bisulfite_reads C2T	146560667	41.64 %	74230088	42.18 %	72330579	41.10 %
Bisulfite_reads G2A	135427503	38.48 %	68617681	38.99 %	66809822	37.96 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	106506533
Average Unique	60.52 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	9004525242	33.66 %	3661665482	27.38 %	5342859760	39.95 %
Base Counts Overall C	4116817782	15.39 %	947746011	7.09 %	3169071771	23.69 %
Base Counts Overall G	4357370663	16.29 %	3279314923	24.52 %	1078055740	8.06 %
Base Counts Overall T	8902799187	33.28 %	5310068179	39.70 %	3592731008	26.86 %
Base Counts Overall N	368845526	1.38 %	176384605	1.32 %	192460921	1.44 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	133250803

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012009_1894951_2
EXTERNAL-K012005_1894947_2
EXTERNAL-K012006_1894948_2
EXTERNAL-K012012_1894954_2
EXTERNAL-K012007_1894949_2
EXTERNAL-K012003_1894945_2
EXTERNAL-K012008_1894950_2
EXTERNAL-K012004_1894946_2
EXTERNAL-K012002_1894944_2
EXTERNAL-K012011_1894953_2
EXTERNAL-K012010_1894952_2