/EXTERNAL BLUEPRINT/mapping_coverage/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
225050443 |
100% |
15882514304 |
100% |
| Mapped |
218657633 |
97.16 % |
15403053554 |
96.98 % |
| Passed |
104516898 |
46.44 % |
6842498429 |
43.08 % |
| NotPassed |
114140735 |
50.72 % |
8560555125 |
53.90 % |
| |
|
|
|
|
| LowMAPQ |
54042404 |
24.01 % |
4053180300 |
25.52 % |
| MateUnmapped |
6392810 |
2.84 % |
479460750 |
3.02 % |
| Duplicate |
56978137 |
25.32 % |
4273360275 |
26.91 % |
| BadOrientation |
2 |
0.00 % |
150 |
0.00 % |
| LargeInsertSize |
26812 |
0.01 % |
2010900 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3093380 |
1.37 % |
232003500 |
1.46 % |
| Unmapped |
6392810 |
2.84 % |
479460750 |
3.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
7363184250 |
100% |
| Passed |
6074216100 |
82.49 % |
| Trimmed |
444671759 |
6.04 % |
| Clipped |
24885986 |
0.34 % |
| Overlapping |
495799835 |
6.73 % |
| LowQuality |
323610570 |
4.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |