/EXTERNAL BLUEPRINT/methylation/K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs
BACK
SAMPLE K012002_K012003_K012004_K012005_K012006_K012007_K012008_K012009_K012010_K012011_K012012_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
21837328 |
618548 |
2.83 % |
| NonRefCpG |
853478 |
2074 |
0.24 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4450577 |
13.77 % |
75596 |
4.80 % |
348499 |
30.73 % |
1257 |
12.51 % |
| Intermediate (0.3-0.7) |
10214149 |
31.61 % |
275478 |
17.49 % |
403675 |
35.59 % |
2240 |
22.30 % |
| Methylated (0.7-1) |
17652334 |
54.62 % |
1224405 |
77.72 % |
381922 |
33.68 % |
6552 |
65.19 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.730 |
|
0.870 |
|
0.520 |
|
0.820 |
|