/EXTERNAL BLUEPRINT/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs/EXTERNAL-K010419_1798661_2
BACK
SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs LANE EXTERNAL-K010419_1798661_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 136176556 | 100.00 % | 68088278 | 100.00 % | 68088278 | 100.00 % |
| General Reads | 132021661 | 96.95 % | 66499386 | 97.67 % | 65522275 | 96.23 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1 | 0.00 % | 0 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4154894 | 3.05 % | 1588892 | 2.33 % | 2566002 | 3.77 % |
| Bisulfite_reads C2T | 68244791 | 50.11 % | 34367489 | 50.47 % | 33877302 | 49.75 % |
| Bisulfite_reads G2A | 63776871 | 46.83 % | 32131897 | 47.19 % | 31644974 | 46.48 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 50707948 |
| Average Unique | 74.47 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3765883595 | 36.39 % | 1446090365 | 27.95 % | 2319793230 | 44.83 % |
| Base Counts Overall C | 1345778092 | 13.00 % | 133252803 | 2.58 % | 1212525289 | 23.43 % |
| Base Counts Overall G | 1407772233 | 13.60 % | 1243899661 | 24.04 % | 163872572 | 3.17 % |
| Base Counts Overall T | 3686519644 | 35.62 % | 2282579885 | 44.11 % | 1403939759 | 27.13 % |
| Base Counts Overall N | 143464692 | 1.39 % | 68886414 | 1.33 % | 74578278 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 62594292 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 68088278 |
| 75 | 68088278 |
Insert Size Plot
| Insert Size Histogram |
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