/EXTERNAL BLUEPRINT/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs/EXTERNAL-K010420_1798662_2
BACK
SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs LANE EXTERNAL-K010420_1798662_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 19906504 | 100.00 % | 9953252 | 100.00 % | 9953252 | 100.00 % |
| General Reads | 15243102 | 76.57 % | 7705703 | 77.42 % | 7537399 | 75.73 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 13 | 0.00 % | 7 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4663389 | 23.43 % | 2247542 | 22.58 % | 2415847 | 24.27 % |
| Bisulfite_reads C2T | 7858132 | 39.48 % | 3971210 | 39.90 % | 3886922 | 39.05 % |
| Bisulfite_reads G2A | 7384983 | 37.10 % | 3734500 | 37.52 % | 3650483 | 36.68 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5933274 |
| Average Unique | 59.61 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 485152668 | 32.07 % | 203789880 | 26.94 % | 281362788 | 37.20 % |
| Base Counts Overall C | 253081283 | 16.73 % | 74384535 | 9.83 % | 178696748 | 23.62 % |
| Base Counts Overall G | 268084751 | 17.72 % | 185653516 | 24.54 % | 82431235 | 10.90 % |
| Base Counts Overall T | 485597181 | 32.10 % | 282549178 | 37.35 % | 203048003 | 26.84 % |
| Base Counts Overall N | 20978421 | 1.39 % | 10070043 | 1.33 % | 10908378 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7317365 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9953252 |
| 75 | 9953252 |
Insert Size Plot
| Insert Size Histogram |
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