/EXTERNAL BLUEPRINT/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs/EXTERNAL-K010422_1798664_2
BACK
SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs LANE EXTERNAL-K010422_1798664_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 19259254 | 100.00 % | 9629627 | 100.00 % | 9629627 | 100.00 % |
| General Reads | 15528322 | 80.63 % | 7843223 | 81.45 % | 7685099 | 79.81 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3730932 | 19.37 % | 1786404 | 18.55 % | 1944528 | 20.19 % |
| Bisulfite_reads C2T | 8000413 | 41.54 % | 4039875 | 41.95 % | 3960538 | 41.13 % |
| Bisulfite_reads G2A | 7527909 | 39.09 % | 3803348 | 39.50 % | 3724561 | 38.68 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 6044224 |
| Average Unique | 62.77 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 487356109 | 33.30 % | 197119778 | 26.93 % | 290236331 | 39.66 % |
| Base Counts Overall C | 228525419 | 15.61 % | 51534954 | 7.04 % | 176990465 | 24.18 % |
| Base Counts Overall G | 242767729 | 16.59 % | 184178669 | 25.17 % | 58589060 | 8.01 % |
| Base Counts Overall T | 484769489 | 33.12 % | 289275113 | 39.53 % | 195494376 | 26.71 % |
| Base Counts Overall N | 20284558 | 1.39 % | 9743138 | 1.33 % | 10541420 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7461636 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9629627 |
| 75 | 9629627 |
Insert Size Plot
| Insert Size Histogram |
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