/EXTERNAL BLUEPRINT/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs/EXTERNAL-K010423_1798665_2
BACK
SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs LANE EXTERNAL-K010423_1798665_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 21195412 | 100.00 % | 10597706 | 100.00 % | 10597706 | 100.00 % |
| General Reads | 16191624 | 76.39 % | 8179202 | 77.18 % | 8012422 | 75.61 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 5 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5003782 | 23.61 % | 2418499 | 22.82 % | 2585283 | 24.39 % |
| Bisulfite_reads C2T | 8354870 | 39.42 % | 4219216 | 39.81 % | 4135654 | 39.02 % |
| Bisulfite_reads G2A | 7836760 | 36.97 % | 3959991 | 37.37 % | 3876769 | 36.58 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 6299451 |
| Average Unique | 59.44 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 523649793 | 32.51 % | 216806512 | 26.92 % | 306843281 | 38.10 % |
| Base Counts Overall C | 262808161 | 16.31 % | 73089084 | 9.07 % | 189719077 | 23.56 % |
| Base Counts Overall G | 278821451 | 17.31 % | 196429442 | 24.39 % | 82392009 | 10.23 % |
| Base Counts Overall T | 523245267 | 32.48 % | 308378123 | 38.29 % | 214867144 | 26.68 % |
| Base Counts Overall N | 22326640 | 1.39 % | 10722495 | 1.33 % | 11604145 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7777954 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 10597706 |
| 75 | 10597706 |
Insert Size Plot
| Insert Size Histogram |
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