/EXTERNAL BLUEPRINT/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs/EXTERNAL-K010425_1798667_2
BACK
SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs LANE EXTERNAL-K010425_1798667_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 20093090 | 100.00 % | 10046545 | 100.00 % | 10046545 | 100.00 % |
| General Reads | 15156358 | 75.43 % | 7699078 | 76.63 % | 7457280 | 74.23 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 11 | 0.00 % | 5 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4936721 | 24.57 % | 2347462 | 23.37 % | 2589259 | 25.77 % |
| Bisulfite_reads C2T | 7808045 | 38.86 % | 3964710 | 39.46 % | 3843335 | 38.26 % |
| Bisulfite_reads G2A | 7348324 | 36.57 % | 3734373 | 37.17 % | 3613951 | 35.97 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5881874 |
| Average Unique | 58.55 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 475921526 | 31.17 % | 207666757 | 27.20 % | 268254769 | 35.13 % |
| Base Counts Overall C | 266587504 | 17.46 % | 88975606 | 11.65 % | 177611898 | 23.26 % |
| Base Counts Overall G | 281583372 | 18.44 % | 182897516 | 23.95 % | 98685856 | 12.92 % |
| Base Counts Overall T | 481819495 | 31.55 % | 273834063 | 35.86 % | 207985432 | 27.24 % |
| Base Counts Overall N | 21162943 | 1.39 % | 10163478 | 1.33 % | 10999465 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7259274 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 10046545 |
| 75 | 10046545 |
Insert Size Plot
| Insert Size Histogram |
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