/EXTERNAL BLUEPRINT/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs/EXTERNAL-K010427_1798669_2
BACK
SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs LANE EXTERNAL-K010427_1798669_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18328668 | 100.00 % | 9164334 | 100.00 % | 9164334 | 100.00 % |
| General Reads | 13889370 | 75.78 % | 7055157 | 76.98 % | 6834213 | 74.57 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 2 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4439294 | 24.22 % | 2109175 | 23.02 % | 2330119 | 25.43 % |
| Bisulfite_reads C2T | 7165043 | 39.09 % | 3638269 | 39.70 % | 3526774 | 38.48 % |
| Bisulfite_reads G2A | 6724331 | 36.69 % | 3416890 | 37.28 % | 3307441 | 36.09 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5309205 |
| Average Unique | 57.93 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 461242620 | 33.11 % | 187323497 | 26.90 % | 273919123 | 39.33 % |
| Base Counts Overall C | 223013898 | 16.01 % | 59689056 | 8.57 % | 163324842 | 23.45 % |
| Base Counts Overall G | 237958162 | 17.08 % | 171296852 | 24.59 % | 66661310 | 9.57 % |
| Base Counts Overall T | 451469334 | 32.41 % | 268908821 | 38.61 % | 182560513 | 26.21 % |
| Base Counts Overall N | 19294754 | 1.39 % | 9271158 | 1.33 % | 10023596 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6626340 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9164334 |
| 75 | 9164334 |
Insert Size Plot
| Insert Size Histogram |
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