/EXTERNAL BLUEPRINT/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs/EXTERNAL-K010428_1798670_2
BACK
SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs LANE EXTERNAL-K010428_1798670_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 44122950 | 100.00 % | 22061475 | 100.00 % | 22061475 | 100.00 % |
| General Reads | 40529615 | 91.86 % | 20476471 | 92.82 % | 20053144 | 90.90 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 2 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3593331 | 8.14 % | 1585002 | 7.18 % | 2008329 | 9.10 % |
| Bisulfite_reads C2T | 20903160 | 47.37 % | 10558472 | 47.86 % | 10344688 | 46.89 % |
| Bisulfite_reads G2A | 19626459 | 44.48 % | 9918001 | 44.96 % | 9708458 | 44.01 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 15045915 |
| Average Unique | 68.20 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1219094376 | 36.35 % | 474111527 | 28.28 % | 744982849 | 44.43 % |
| Base Counts Overall C | 447430490 | 13.34 % | 56234442 | 3.35 % | 391196048 | 23.33 % |
| Base Counts Overall G | 475785826 | 14.19 % | 407356124 | 24.30 % | 68429702 | 4.08 % |
| Base Counts Overall T | 1164417278 | 34.72 % | 716648469 | 42.74 % | 447768809 | 26.71 % |
| Base Counts Overall N | 46616230 | 1.39 % | 22321538 | 1.33 % | 24294692 | 1.45 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 19160750 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 22061475 |
| 75 | 22061475 |
Insert Size Plot
| Insert Size Histogram |
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