/EXTERNAL BLUEPRINT/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs/EXTERNAL-K010429_1798671_2
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SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs LANE EXTERNAL-K010429_1798671_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 51733172 | 100.00 % | 25866586 | 100.00 % | 25866586 | 100.00 % |
| General Reads | 48517980 | 93.79 % | 24487073 | 94.67 % | 24030907 | 92.90 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 57 | 0.00 % | 28 | 0.00 % | 29 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3215135 | 6.21 % | 1379485 | 5.33 % | 1835650 | 7.10 % |
| Bisulfite_reads C2T | 25047413 | 48.42 % | 12637725 | 48.86 % | 12409688 | 47.98 % |
| Bisulfite_reads G2A | 23470624 | 45.37 % | 11849376 | 45.81 % | 11621248 | 44.93 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 18741280 |
| Average Unique | 72.45 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1401846837 | 35.65 % | 534525563 | 27.19 % | 867321274 | 44.12 % |
| Base Counts Overall C | 526687923 | 13.40 % | 57398276 | 2.92 % | 469289647 | 23.87 % |
| Base Counts Overall G | 551353793 | 14.02 % | 480259937 | 24.43 % | 71093856 | 3.62 % |
| Base Counts Overall T | 1397339458 | 35.54 % | 867508421 | 44.13 % | 529831037 | 26.95 % |
| Base Counts Overall N | 54493061 | 1.39 % | 26168339 | 1.33 % | 28324722 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 23217220 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 25866586 |
| 75 | 25866586 |
Insert Size Plot
| Insert Size Histogram |
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