/EXTERNAL BLUEPRINT/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs

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SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	393901810	100.00 %	196950905	100.00 %	196950905	100.00 %
General Reads	343936297	87.32 %	173609944	88.15 %	170326353	86.48 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	131	0.00 %	66	0.00 %	65	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	49965382	12.68 %	23340895	11.85 %	26624487	13.52 %
Bisulfite_reads C2T	177576096	45.08 %	89611282	45.50 %	87964814	44.66 %
Bisulfite_reads G2A	166360332	42.23 %	83998728	42.65 %	82361604	41.82 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	132164792
Average Unique	67.11 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	10371630974	34.65 %	4098250436	27.38 %	6273380538	41.91 %
Base Counts Overall C	4343213946	14.51 %	802900163	5.36 %	3540313783	23.65 %
Base Counts Overall G	4577167346	15.29 %	3651072527	24.39 %	926094819	6.19 %
Base Counts Overall T	10229427783	34.17 %	6216786865	41.53 %	4012640918	26.81 %
Base Counts Overall N	415097511	1.39 %	199258789	1.33 %	215838722	1.44 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	163932295

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010427_1798669_2
EXTERNAL-K010419_1798661_2
EXTERNAL-K010422_1798664_2
EXTERNAL-K010429_1798671_2
EXTERNAL-K010421_1798663_2
EXTERNAL-K010424_1798666_2
EXTERNAL-K010426_1798668_2
EXTERNAL-K010428_1798670_2
EXTERNAL-K010423_1798665_2
EXTERNAL-K010425_1798667_2
EXTERNAL-K010420_1798662_2