/EXTERNAL BLUEPRINT/mapping_coverage/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs
BACK
SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
270423066 |
100% |
19143872915 |
100% |
| Mapped |
265204153 |
98.07 % |
18752454440 |
97.96 % |
| Passed |
123846516 |
45.80 % |
8150631665 |
42.58 % |
| NotPassed |
141357637 |
52.27 % |
10601822775 |
55.38 % |
| |
|
|
|
|
| LowMAPQ |
63959052 |
23.65 % |
4796928900 |
25.06 % |
| MateUnmapped |
5218913 |
1.93 % |
391418475 |
2.04 % |
| Duplicate |
73559049 |
27.20 % |
5516928675 |
28.82 % |
| BadOrientation |
2 |
0.00 % |
150 |
0.00 % |
| LargeInsertSize |
128254 |
0.05 % |
9619050 |
0.05 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3711280 |
1.37 % |
278346000 |
1.45 % |
| Unmapped |
5218913 |
1.93 % |
391418475 |
2.04 % |
Base Level Counts
| Bases |
# |
% |
| Total |
8776452825 |
100% |
| Passed |
7213051039 |
82.19 % |
| Trimmed |
529784915 |
6.04 % |
| Clipped |
29432697 |
0.34 % |
| Overlapping |
596388463 |
6.80 % |
| LowQuality |
407795711 |
4.65 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |