/EXTERNAL BLUEPRINT/methylation/K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs
BACK
SAMPLE K010419_K010420_K010421_K010422_K010423_K010424_K010425_K010426_K010427_K010428_K010429_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
22535546 |
957515 |
4.25 % |
| NonRefCpG |
796233 |
3597 |
0.45 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4633814 |
13.45 % |
122297 |
5.01 % |
345569 |
31.58 % |
1650 |
10.66 % |
| Intermediate (0.3-0.7) |
10603100 |
30.77 % |
424440 |
17.37 % |
382630 |
34.96 % |
3319 |
21.44 % |
| Methylated (0.7-1) |
19226937 |
55.79 % |
1896465 |
77.62 % |
366207 |
33.46 % |
10515 |
67.90 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.740 |
|
0.870 |
|
0.510 |
|
0.830 |
|