/EXTERNAL BLUEPRINT/K012013_K012014_K012015_K012016_K012017_K012018_K012019_K012020_K012021_9_lane_gembs/EXTERNAL-K012014_1894956_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 17358098 | 100.00 % | 8679049 | 100.00 % | 8679049 | 100.00 % |
| General Reads | 10008382 | 57.66 % | 5054527 | 58.24 % | 4953855 | 57.08 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 9 | 0.00 % | 3 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7349707 | 42.34 % | 3624519 | 41.76 % | 3725188 | 42.92 % |
| Bisulfite_reads C2T | 5162171 | 29.74 % | 2605866 | 30.02 % | 2556305 | 29.45 % |
| Bisulfite_reads G2A | 4846220 | 27.92 % | 2448664 | 28.21 % | 2397556 | 27.62 % |
| Concept | Value |
|---|---|
| Unique Fragments | 3845746 |
| Average Unique | 44.31 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 376458074 | 28.17 % | 173454716 | 25.96 % | 203003358 | 30.38 % |
| Base Counts Overall C | 278726834 | 20.85 % | 117695046 | 17.61 % | 161031788 | 24.10 % |
| Base Counts Overall G | 287359054 | 21.50 % | 164999745 | 24.69 % | 122359309 | 18.31 % |
| Base Counts Overall T | 376572639 | 28.17 % | 203403576 | 30.44 % | 173169063 | 25.91 % |
| Base Counts Overall N | 17456945 | 1.31 % | 8733690 | 1.31 % | 8723255 | 1.31 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 4761114 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 76 | 8679049 |
| 76 | 8679049 |
| Insert Size Histogram |
|---|
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