/EXTERNAL BLUEPRINT/K012013_K012014_K012015_K012016_K012017_K012018_K012019_K012020_K012021_9_lane_gembs/EXTERNAL-K012018_1894960_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 19563042 | 100.00 % | 9781521 | 100.00 % | 9781521 | 100.00 % |
| General Reads | 8407691 | 42.98 % | 4242023 | 43.37 % | 4165668 | 42.59 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 9 | 0.00 % | 4 | 0.00 % | 5 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 11155342 | 57.02 % | 5539494 | 56.63 % | 5615848 | 57.41 % |
| Bisulfite_reads C2T | 4335295 | 22.16 % | 2186377 | 22.35 % | 2148918 | 21.97 % |
| Bisulfite_reads G2A | 4072405 | 20.82 % | 2055650 | 21.02 % | 2016755 | 20.62 % |
| Concept | Value |
|---|---|
| Unique Fragments | 3153791 |
| Average Unique | 32.24 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 417616423 | 27.72 % | 206601303 | 27.43 % | 211015120 | 28.02 % |
| Base Counts Overall C | 320638818 | 21.29 % | 150789969 | 20.02 % | 169848849 | 22.55 % |
| Base Counts Overall G | 329459590 | 21.87 % | 173289618 | 23.01 % | 156169972 | 20.73 % |
| Base Counts Overall T | 418964076 | 27.81 % | 212651714 | 28.23 % | 206312362 | 27.39 % |
| Base Counts Overall N | 19675327 | 1.31 % | 9844513 | 1.31 % | 9830814 | 1.31 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 3944825 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 76 | 9781521 |
| 76 | 9781521 |
| Insert Size Histogram |
|---|
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