/EXTERNAL BLUEPRINT/mapping_coverage/K012013_K012014_K012015_K012016_K012017_K012018_K012019_K012020_K012021_9_lane_gembs
BACK
SAMPLE K012013_K012014_K012015_K012016_K012017_K012018_K012019_K012020_K012021_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
183514258 |
100% |
12891770973 |
100% |
| Mapped |
180309159 |
98.25 % |
12648183449 |
98.11 % |
| Passed |
110145874 |
60.02 % |
7315773789 |
56.75 % |
| NotPassed |
70163285 |
38.23 % |
5332409660 |
41.36 % |
| |
|
|
|
|
| LowMAPQ |
39903540 |
21.74 % |
3032669040 |
23.52 % |
| MateUnmapped |
3205099 |
1.75 % |
243587524 |
1.89 % |
| Duplicate |
27857641 |
15.18 % |
2117180716 |
16.42 % |
| BadOrientation |
10 |
0.00 % |
760 |
0.00 % |
| LargeInsertSize |
11442 |
0.01 % |
869592 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2390652 |
1.30 % |
181689552 |
1.41 % |
| Unmapped |
3205099 |
1.75 % |
243587524 |
1.89 % |
Base Level Counts
| Bases |
# |
% |
| Total |
8032996244 |
100% |
| Passed |
6679330012 |
83.15 % |
| Trimmed |
472004212 |
5.88 % |
| Clipped |
21784640 |
0.27 % |
| Overlapping |
695437815 |
8.66 % |
| LowQuality |
164439565 |
2.05 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |