/EXTERNAL BLUEPRINT/methylation/K012013_K012014_K012015_K012016_K012017_K012018_K012019_K012020_K012021_9_lane_gembs
BACK
SAMPLE K012013_K012014_K012015_K012016_K012017_K012018_K012019_K012020_K012021_9_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
22233675 |
677888 |
3.05 % |
| NonRefCpG |
772703 |
1889 |
0.24 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4132765 |
12.21 % |
52864 |
3.12 % |
305740 |
29.09 % |
716 |
7.76 % |
| Intermediate (0.3-0.7) |
10821069 |
31.98 % |
297768 |
17.56 % |
376612 |
35.84 % |
2074 |
22.44 % |
| Methylated (0.7-1) |
18887713 |
55.81 % |
1345432 |
79.33 % |
368559 |
35.07 % |
6451 |
69.80 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.740 |
|
0.870 |
|
0.540 |
|
0.830 |
|