/EXTERNAL BLUEPRINT/mapping_coverage/K010451_K010452_K010453_K010454_K010455_K010456_K010457_K010458_K010459_K010460_10_lane_gembs
BACK
SAMPLE K010451_K010452_K010453_K010454_K010455_K010456_K010457_K010458_K010459_K010460_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
219176739 |
100% |
15434301814 |
100% |
| Mapped |
213944353 |
97.61 % |
15041872864 |
97.46 % |
| Passed |
107519702 |
49.06 % |
7060024039 |
45.74 % |
| NotPassed |
106424651 |
48.56 % |
7981848825 |
51.71 % |
| |
|
|
|
|
| LowMAPQ |
50921596 |
23.23 % |
3819119700 |
24.74 % |
| MateUnmapped |
5232386 |
2.39 % |
392428950 |
2.54 % |
| Duplicate |
52479679 |
23.94 % |
3935975925 |
25.50 % |
| BadOrientation |
2 |
0.00 % |
150 |
0.00 % |
| LargeInsertSize |
50986 |
0.02 % |
3823950 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2972388 |
1.36 % |
222929100 |
1.44 % |
| Unmapped |
5232386 |
2.39 % |
392428950 |
2.54 % |
Base Level Counts
| Bases |
# |
% |
| Total |
7592489100 |
100% |
| Passed |
6153385072 |
81.05 % |
| Trimmed |
457707253 |
6.03 % |
| Clipped |
29126209 |
0.38 % |
| Overlapping |
503338852 |
6.63 % |
| LowQuality |
448931714 |
5.91 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |