/EXTERNAL BLUEPRINT/K010471_K010472_K010473_K010474_K010475_K010476_K010477_K010478_K010479_K010480_K010481_11_lane_gembs/EXTERNAL-K010476_1798718_2
BACK
SAMPLE K010471_K010472_K010473_K010474_K010475_K010476_K010477_K010478_K010479_K010480_K010481_11_lane_gembs LANE EXTERNAL-K010476_1798718_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18128894 | 100.00 % | 9064447 | 100.00 % | 9064447 | 100.00 % |
| General Reads | 14557267 | 80.30 % | 7359507 | 81.19 % | 7197760 | 79.41 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 24 | 0.00 % | 12 | 0.00 % | 12 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3571603 | 19.70 % | 1704928 | 18.81 % | 1866675 | 20.59 % |
| Bisulfite_reads C2T | 7512503 | 41.44 % | 3797247 | 41.89 % | 3715256 | 40.99 % |
| Bisulfite_reads G2A | 7044788 | 38.86 % | 3562272 | 39.30 % | 3482516 | 38.42 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5671163 |
| Average Unique | 62.56 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 424801264 | 30.83 % | 187885680 | 27.27 % | 236915584 | 34.39 % |
| Base Counts Overall C | 246016886 | 17.86 % | 90182398 | 13.09 % | 155834488 | 22.62 % |
| Base Counts Overall G | 260426218 | 18.90 % | 160686367 | 23.33 % | 99739851 | 14.48 % |
| Base Counts Overall T | 427471553 | 31.03 % | 240945617 | 34.98 % | 186525936 | 27.08 % |
| Base Counts Overall N | 19080023 | 1.38 % | 9197910 | 1.34 % | 9882113 | 1.43 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7004185 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9064447 |
| 75 | 9064447 |
Insert Size Plot
| Insert Size Histogram |
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