/EXTERNAL BLUEPRINT/K010471_K010472_K010473_K010474_K010475_K010476_K010477_K010478_K010479_K010480_K010481_11_lane_gembs/EXTERNAL-K010478_1798720_2
BACK
SAMPLE K010471_K010472_K010473_K010474_K010475_K010476_K010477_K010478_K010479_K010480_K010481_11_lane_gembs LANE EXTERNAL-K010478_1798720_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18986082 | 100.00 % | 9493041 | 100.00 % | 9493041 | 100.00 % |
| General Reads | 12224842 | 64.39 % | 6182813 | 65.13 % | 6042029 | 63.65 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 36 | 0.00 % | 18 | 0.00 % | 18 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6761204 | 35.61 % | 3310210 | 34.87 % | 3450994 | 36.35 % |
| Bisulfite_reads C2T | 6318579 | 33.28 % | 3194144 | 33.65 % | 3124435 | 32.91 % |
| Bisulfite_reads G2A | 5906299 | 31.11 % | 2988687 | 31.48 % | 2917612 | 30.73 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4647544 |
| Average Unique | 48.96 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 448903253 | 31.11 % | 190067773 | 26.34 % | 258835480 | 35.88 % |
| Base Counts Overall C | 253410489 | 17.56 % | 80868146 | 11.21 % | 172542343 | 23.92 % |
| Base Counts Overall G | 270593043 | 18.75 % | 178785053 | 24.78 % | 91807990 | 12.73 % |
| Base Counts Overall T | 450059807 | 31.19 % | 262119481 | 36.33 % | 187940326 | 26.05 % |
| Base Counts Overall N | 19975640 | 1.38 % | 9630663 | 1.33 % | 10344977 | 1.43 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5774150 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9493041 |
| 75 | 9493041 |
Insert Size Plot
| Insert Size Histogram |
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