/EXTERNAL BLUEPRINT/K010471_K010472_K010473_K010474_K010475_K010476_K010477_K010478_K010479_K010480_K010481_11_lane_gembs/EXTERNAL-K010479_1798721_2
BACK
SAMPLE K010471_K010472_K010473_K010474_K010475_K010476_K010477_K010478_K010479_K010480_K010481_11_lane_gembs LANE EXTERNAL-K010479_1798721_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 13945876 | 100.00 % | 6972938 | 100.00 % | 6972938 | 100.00 % |
| General Reads | 9455199 | 67.80 % | 4799088 | 68.82 % | 4656111 | 66.77 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 22 | 0.00 % | 11 | 0.00 % | 11 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4490655 | 32.20 % | 2173839 | 31.18 % | 2316816 | 33.23 % |
| Bisulfite_reads C2T | 4889392 | 35.06 % | 2480852 | 35.58 % | 2408540 | 34.54 % |
| Bisulfite_reads G2A | 4565829 | 32.74 % | 2318247 | 33.25 % | 2247582 | 32.23 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3552466 |
| Average Unique | 50.95 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 337415441 | 31.84 % | 141544268 | 26.71 % | 195871173 | 36.96 % |
| Base Counts Overall C | 183510074 | 17.31 % | 58076590 | 10.96 % | 125433484 | 23.67 % |
| Base Counts Overall G | 195386183 | 18.43 % | 131099918 | 24.74 % | 64286265 | 12.13 % |
| Base Counts Overall T | 328915416 | 31.03 % | 192148152 | 36.26 % | 136767264 | 25.81 % |
| Base Counts Overall N | 14659462 | 1.38 % | 7074360 | 1.33 % | 7585102 | 1.43 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4471309 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 6972938 |
| 75 | 6972938 |
Insert Size Plot
| Insert Size Histogram |
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