/EXTERNAL BLUEPRINT/mapping_coverage/K010471_K010472_K010473_K010474_K010475_K010476_K010477_K010478_K010479_K010480_K010481_11_lane_gembs
BACK
SAMPLE K010471_K010472_K010473_K010474_K010475_K010476_K010477_K010478_K010479_K010480_K010481_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
232968393 |
100% |
16398510768 |
100% |
| Mapped |
227967899 |
97.85 % |
16023473718 |
97.71 % |
| Passed |
112255796 |
48.18 % |
7345065993 |
44.79 % |
| NotPassed |
115712103 |
49.67 % |
8678407725 |
52.92 % |
| |
|
|
|
|
| LowMAPQ |
54822406 |
23.53 % |
4111680450 |
25.07 % |
| MateUnmapped |
5000494 |
2.15 % |
375037050 |
2.29 % |
| Duplicate |
57394404 |
24.64 % |
4304580300 |
26.25 % |
| BadOrientation |
8 |
0.00 % |
600 |
0.00 % |
| LargeInsertSize |
111624 |
0.05 % |
8371800 |
0.05 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3383661 |
1.45 % |
253774575 |
1.55 % |
| Unmapped |
5000494 |
2.15 % |
375037050 |
2.29 % |
Base Level Counts
| Bases |
# |
% |
| Total |
7913384550 |
100% |
| Passed |
6456953871 |
81.60 % |
| Trimmed |
477614619 |
6.04 % |
| Clipped |
26166626 |
0.33 % |
| Overlapping |
542151931 |
6.85 % |
| LowQuality |
410497503 |
5.19 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |