/EXTERNAL BLUEPRINT/methylation/K010471_K010472_K010473_K010474_K010475_K010476_K010477_K010478_K010479_K010480_K010481_11_lane_gembs
BACK
SAMPLE K010471_K010472_K010473_K010474_K010475_K010476_K010477_K010478_K010479_K010480_K010481_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
22052834 |
643831 |
2.92 % |
| NonRefCpG |
827905 |
2259 |
0.27 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4482353 |
13.51 % |
72897 |
4.37 % |
342886 |
30.74 % |
1012 |
9.95 % |
| Intermediate (0.3-0.7) |
10466743 |
31.56 % |
290835 |
17.42 % |
396170 |
35.52 % |
2196 |
21.58 % |
| Methylated (0.7-1) |
18218468 |
54.93 % |
1305854 |
78.21 % |
376400 |
33.74 % |
6966 |
68.46 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.730 |
|
0.870 |
|
0.520 |
|
0.830 |
|