/EXTERNAL BLUEPRINT/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs/EXTERNAL-K012023_1894965_2
BACK
SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs LANE EXTERNAL-K012023_1894965_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 10909716 | 100.00 % | 5454858 | 100.00 % | 5454858 | 100.00 % |
| General Reads | 6203782 | 56.86 % | 3132660 | 57.43 % | 3071122 | 56.30 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 22 | 0.00 % | 11 | 0.00 % | 11 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4705912 | 43.14 % | 2322187 | 42.57 % | 2383725 | 43.70 % |
| Bisulfite_reads C2T | 3200873 | 29.34 % | 1615621 | 29.62 % | 1585252 | 29.06 % |
| Bisulfite_reads G2A | 3002931 | 27.53 % | 1517050 | 27.81 % | 1485881 | 27.24 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2400250 |
| Average Unique | 44.00 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 233938759 | 27.85 % | 106541071 | 25.37 % | 127397688 | 30.33 % |
| Base Counts Overall C | 178674367 | 21.27 % | 75836376 | 18.06 % | 102837991 | 24.48 % |
| Base Counts Overall G | 182584070 | 21.73 % | 104747695 | 24.94 % | 77836375 | 18.53 % |
| Base Counts Overall T | 233843465 | 27.84 % | 127417590 | 30.34 % | 106425875 | 25.34 % |
| Base Counts Overall N | 11007471 | 1.31 % | 5481334 | 1.31 % | 5526137 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 2959266 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 5454858 |
| 76 | 5454858 |
Insert Size Plot
| Insert Size Histogram |
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