/EXTERNAL BLUEPRINT/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs/EXTERNAL-K012024_1894966_2
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SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs LANE EXTERNAL-K012024_1894966_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 14774168 | 100.00 % | 7387084 | 100.00 % | 7387084 | 100.00 % |
| General Reads | 8326594 | 56.36 % | 4206546 | 56.94 % | 4120048 | 55.77 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 20 | 0.00 % | 7 | 0.00 % | 13 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6447554 | 43.64 % | 3180531 | 43.06 % | 3267023 | 44.23 % |
| Bisulfite_reads C2T | 4299513 | 29.10 % | 2171328 | 29.39 % | 2128185 | 28.81 % |
| Bisulfite_reads G2A | 4027101 | 27.26 % | 2035225 | 27.55 % | 1991876 | 26.96 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3199989 |
| Average Unique | 43.32 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 320855842 | 28.20 % | 143256189 | 25.19 % | 177599653 | 31.22 % |
| Base Counts Overall C | 237417610 | 20.87 % | 95721552 | 16.83 % | 141696058 | 24.91 % |
| Base Counts Overall G | 244638246 | 21.50 % | 145515160 | 25.58 % | 99123086 | 17.43 % |
| Base Counts Overall T | 319795044 | 28.11 % | 176891046 | 31.10 % | 142903998 | 25.12 % |
| Base Counts Overall N | 14904194 | 1.31 % | 7421521 | 1.30 % | 7482673 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3956499 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7387084 |
| 76 | 7387084 |
Insert Size Plot
| Insert Size Histogram |
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