/EXTERNAL BLUEPRINT/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs/EXTERNAL-K012025_1894967_2
BACK
SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs LANE EXTERNAL-K012025_1894967_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 13669154 | 100.00 % | 6834577 | 100.00 % | 6834577 | 100.00 % |
| General Reads | 6793542 | 49.70 % | 3432089 | 50.22 % | 3361453 | 49.18 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 20 | 0.00 % | 9 | 0.00 % | 11 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6875592 | 50.30 % | 3402479 | 49.78 % | 3473113 | 50.82 % |
| Bisulfite_reads C2T | 3505505 | 25.65 % | 1770420 | 25.90 % | 1735085 | 25.39 % |
| Bisulfite_reads G2A | 3288057 | 24.05 % | 1661678 | 24.31 % | 1626379 | 23.80 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2605693 |
| Average Unique | 38.13 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 288759376 | 27.43 % | 132224047 | 25.13 % | 156535329 | 29.74 % |
| Base Counts Overall C | 227464249 | 21.61 % | 99107343 | 18.83 % | 128356906 | 24.39 % |
| Base Counts Overall G | 232880244 | 22.13 % | 130935310 | 24.88 % | 101944934 | 19.37 % |
| Base Counts Overall T | 289629919 | 27.52 % | 157129708 | 29.86 % | 132500211 | 25.18 % |
| Base Counts Overall N | 13791070 | 1.31 % | 6866021 | 1.30 % | 6925049 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3226162 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 6834577 |
| 76 | 6834577 |
Insert Size Plot
| Insert Size Histogram |
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