/EXTERNAL BLUEPRINT/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs/EXTERNAL-K012026_1894968_2
BACK
SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs LANE EXTERNAL-K012026_1894968_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 13604224 | 100.00 % | 6802112 | 100.00 % | 6802112 | 100.00 % |
| General Reads | 7401272 | 54.40 % | 3744351 | 55.05 % | 3656921 | 53.76 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 35 | 0.00 % | 15 | 0.00 % | 20 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6202917 | 45.60 % | 3057746 | 44.95 % | 3145171 | 46.24 % |
| Bisulfite_reads C2T | 3821533 | 28.09 % | 1932746 | 28.41 % | 1888787 | 27.77 % |
| Bisulfite_reads G2A | 3579774 | 26.31 % | 1811620 | 26.63 % | 1768154 | 25.99 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2810713 |
| Average Unique | 41.32 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 296526674 | 28.31 % | 136480824 | 26.06 % | 160045850 | 30.56 % |
| Base Counts Overall C | 218794179 | 20.89 % | 93044872 | 17.76 % | 125749307 | 24.01 % |
| Base Counts Overall G | 224498170 | 21.43 % | 128507601 | 24.54 % | 95990569 | 18.33 % |
| Base Counts Overall T | 293982815 | 28.06 % | 158896865 | 30.34 % | 135085950 | 25.79 % |
| Base Counts Overall N | 13723410 | 1.31 % | 6832462 | 1.30 % | 6890948 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3488483 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 6802112 |
| 76 | 6802112 |
Insert Size Plot
| Insert Size Histogram |
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