/EXTERNAL BLUEPRINT/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs/EXTERNAL-K012027_1894969_2
BACK
SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs LANE EXTERNAL-K012027_1894969_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 13454398 | 100.00 % | 6727199 | 100.00 % | 6727199 | 100.00 % |
| General Reads | 7673325 | 57.03 % | 3882178 | 57.71 % | 3791147 | 56.36 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 26 | 0.00 % | 12 | 0.00 % | 14 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5781047 | 42.97 % | 2845009 | 42.29 % | 2936038 | 43.64 % |
| Bisulfite_reads C2T | 3962896 | 29.45 % | 2004237 | 29.79 % | 1958659 | 29.12 % |
| Bisulfite_reads G2A | 3710455 | 27.58 % | 1877953 | 27.92 % | 1832502 | 27.24 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2927587 |
| Average Unique | 43.52 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 295245558 | 28.50 % | 130008611 | 25.10 % | 165236947 | 31.90 % |
| Base Counts Overall C | 213497737 | 20.61 % | 84618638 | 16.34 % | 128879099 | 24.88 % |
| Base Counts Overall G | 220194487 | 21.25 % | 132462641 | 25.57 % | 87731846 | 16.94 % |
| Base Counts Overall T | 293476039 | 28.33 % | 164145035 | 31.69 % | 129331004 | 24.97 % |
| Base Counts Overall N | 13574825 | 1.31 % | 6759398 | 1.30 % | 6815427 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3619872 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 6727199 |
| 76 | 6727199 |
Insert Size Plot
| Insert Size Histogram |
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