/EXTERNAL BLUEPRINT/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs/EXTERNAL-K012028_1894970_2
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SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs LANE EXTERNAL-K012028_1894970_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 14114480 | 100.00 % | 7057240 | 100.00 % | 7057240 | 100.00 % |
| General Reads | 8288665 | 58.72 % | 4186109 | 59.32 % | 4102556 | 58.13 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 1 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5825813 | 41.28 % | 2871130 | 40.68 % | 2954683 | 41.87 % |
| Bisulfite_reads C2T | 4279214 | 30.32 % | 2160246 | 30.61 % | 2118968 | 30.03 % |
| Bisulfite_reads G2A | 4009453 | 28.41 % | 2025864 | 28.71 % | 1983589 | 28.11 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3212462 |
| Average Unique | 45.52 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 306306896 | 28.18 % | 141194114 | 25.98 % | 165112782 | 30.38 % |
| Base Counts Overall C | 226456289 | 20.84 % | 94759339 | 17.44 % | 131696950 | 24.24 % |
| Base Counts Overall G | 233443749 | 21.48 % | 135087138 | 24.86 % | 98356611 | 18.10 % |
| Base Counts Overall T | 306369195 | 28.19 % | 165278301 | 30.42 % | 141090894 | 25.96 % |
| Base Counts Overall N | 14238831 | 1.31 % | 7088588 | 1.30 % | 7150243 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3957864 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7057240 |
| 76 | 7057240 |
Insert Size Plot
| Insert Size Histogram |
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