/EXTERNAL BLUEPRINT/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs/EXTERNAL-K012030_1894972_2
BACK
SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs LANE EXTERNAL-K012030_1894972_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 13537580 | 100.00 % | 6768790 | 100.00 % | 6768790 | 100.00 % |
| General Reads | 7504494 | 55.43 % | 3789823 | 55.99 % | 3714671 | 54.88 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 12 | 0.00 % | 6 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6033074 | 44.57 % | 2978961 | 44.01 % | 3054113 | 45.12 % |
| Bisulfite_reads C2T | 3876111 | 28.63 % | 1956568 | 28.91 % | 1919543 | 28.36 % |
| Bisulfite_reads G2A | 3628395 | 26.80 % | 1833261 | 27.08 % | 1795134 | 26.52 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2895462 |
| Average Unique | 42.78 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 292562054 | 28.07 % | 132909167 | 25.50 % | 159652887 | 30.63 % |
| Base Counts Overall C | 218764414 | 20.99 % | 92773803 | 17.80 % | 125990611 | 24.17 % |
| Base Counts Overall G | 224113881 | 21.50 % | 128542444 | 24.66 % | 95571437 | 18.34 % |
| Base Counts Overall T | 293297021 | 28.14 % | 160171987 | 30.73 % | 133125034 | 25.54 % |
| Base Counts Overall N | 13656290 | 1.31 % | 6799429 | 1.30 % | 6856861 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3573199 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 6768790 |
| 76 | 6768790 |
Insert Size Plot
| Insert Size Histogram |
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