/EXTERNAL BLUEPRINT/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs/EXTERNAL-K012031_1894973_2
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SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs LANE EXTERNAL-K012031_1894973_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 49972458 | 100.00 % | 24986229 | 100.00 % | 24986229 | 100.00 % |
| General Reads | 42166286 | 84.38 % | 21302191 | 85.26 % | 20864095 | 83.50 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 17 | 0.00 % | 9 | 0.00 % | 8 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7806155 | 15.62 % | 3684029 | 14.74 % | 4122126 | 16.50 % |
| Bisulfite_reads C2T | 21800891 | 43.63 % | 11011097 | 44.07 % | 10789794 | 43.18 % |
| Bisulfite_reads G2A | 20365412 | 40.75 % | 10291103 | 41.19 % | 10074309 | 40.32 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 16126577 |
| Average Unique | 64.54 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1277173289 | 33.19 % | 515923405 | 26.82 % | 761249884 | 39.57 % |
| Base Counts Overall C | 616629924 | 16.03 % | 158941513 | 8.26 % | 457688411 | 23.79 % |
| Base Counts Overall G | 635777283 | 16.52 % | 468486919 | 24.35 % | 167290364 | 8.70 % |
| Base Counts Overall T | 1267884648 | 32.95 % | 755488478 | 39.27 % | 512396170 | 26.63 % |
| Base Counts Overall N | 50414122 | 1.31 % | 25099318 | 1.30 % | 25314804 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 19923539 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 24986229 |
| 76 | 24986229 |
Insert Size Plot
| Insert Size Histogram |
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