/EXTERNAL BLUEPRINT/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs/EXTERNAL-K012032_1894974_2
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SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs LANE EXTERNAL-K012032_1894974_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 48249188 | 100.00 % | 24124594 | 100.00 % | 24124594 | 100.00 % |
| General Reads | 35040590 | 72.62 % | 17698665 | 73.36 % | 17341925 | 71.88 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 34 | 0.00 % | 15 | 0.00 % | 19 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 13208564 | 27.38 % | 6425914 | 26.64 % | 6782650 | 28.12 % |
| Bisulfite_reads C2T | 18104017 | 37.52 % | 9140907 | 37.89 % | 8963110 | 37.15 % |
| Bisulfite_reads G2A | 16936607 | 35.10 % | 8557773 | 35.47 % | 8378834 | 34.73 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 13445574 |
| Average Unique | 55.73 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1170124872 | 31.50 % | 493967751 | 26.59 % | 676157121 | 36.40 % |
| Base Counts Overall C | 657397138 | 17.69 % | 212638418 | 11.45 % | 444758720 | 23.94 % |
| Base Counts Overall G | 678108355 | 18.25 % | 455861137 | 24.54 % | 222247218 | 11.96 % |
| Base Counts Overall T | 1160874466 | 31.25 % | 670887480 | 36.12 % | 489986986 | 26.38 % |
| Base Counts Overall N | 48682645 | 1.31 % | 24238952 | 1.30 % | 24443693 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 16617655 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 24124594 |
| 76 | 24124594 |
Insert Size Plot
| Insert Size Histogram |
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