/EXTERNAL BLUEPRINT/mapping_coverage/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs
BACK
SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
183043087 |
100% |
12912063662 |
100% |
| Mapped |
179244385 |
97.92 % |
12623362310 |
97.76 % |
| Passed |
93901719 |
51.30 % |
6137319694 |
47.53 % |
| NotPassed |
85342666 |
46.62 % |
6486042616 |
50.23 % |
| |
|
|
|
|
| LowMAPQ |
42638908 |
23.29 % |
3240557008 |
25.10 % |
| MateUnmapped |
3798702 |
2.08 % |
288701352 |
2.24 % |
| Duplicate |
40216187 |
21.97 % |
3056430212 |
23.67 % |
| BadOrientation |
6 |
0.00 % |
456 |
0.00 % |
| LargeInsertSize |
18156 |
0.01 % |
1379856 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2469409 |
1.35 % |
187675084 |
1.45 % |
| Unmapped |
3798702 |
2.08 % |
288701352 |
2.24 % |
Base Level Counts
| Bases |
# |
% |
| Total |
6781993380 |
100% |
| Passed |
5587638710 |
82.39 % |
| Trimmed |
396062546 |
5.84 % |
| Clipped |
20911622 |
0.31 % |
| Overlapping |
623762064 |
9.20 % |
| LowQuality |
153618438 |
2.27 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |