/EXTERNAL BLUEPRINT/methylation/K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs
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SAMPLE K012022_K012023_K012024_K012025_K012026_K012027_K012028_K012029_K012030_K012031_K012032_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
21281044 |
362427 |
1.70 % |
| NonRefCpG |
827944 |
985 |
0.12 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4027607 |
12.89 % |
30063 |
3.23 % |
314677 |
28.91 % |
406 |
8.06 % |
| Intermediate (0.3-0.7) |
10258624 |
32.83 % |
164705 |
17.69 % |
394085 |
36.21 % |
1109 |
21.99 % |
| Methylated (0.7-1) |
16957577 |
54.27 % |
736072 |
79.08 % |
379545 |
34.87 % |
3530 |
69.95 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.730 |
|
0.870 |
|
0.540 |
|
0.830 |
|