/EXTERNAL BLUEPRINT/K012130_1_lane_gembs

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SAMPLE K012130_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 147338202 100.00 % 73669101 100.00 % 73669101 100.00 %
General Reads 140179081 95.14 % 70427780 95.60 % 69751301 94.68 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2 0.00 % 1 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7159119 4.86 % 3241320 4.40 % 3917799 5.32 %
Bisulfite_reads C2T 72537600 49.23 % 36435228 49.46 % 36102372 49.01 %
Bisulfite_reads G2A 67641483 45.91 % 33992553 46.14 % 33648930 45.68 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 52688812
Average Unique 71.52 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 4043387759 35.64 % 1554982061 27.41 % 2488405698 43.87 %
Base Counts Overall C 1579314328 13.92 % 181208378 3.19 % 1398105950 24.65 %
Base Counts Overall G 1629088100 14.36 % 1409676294 24.85 % 219411806 3.87 %
Base Counts Overall T 3944804478 34.77 % 2452617287 43.24 % 1492187191 26.31 %
Base Counts Overall N 148446889 1.31 % 74036757 1.31 % 74410132 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 64942900



Mapping Quality

Mapping Quality Histogram
K012130_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012130_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012130_1895072_2