/EXTERNAL BLUEPRINT/mapping_coverage/K012130_1_lane_gembs
BACK
SAMPLE K012130_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
119390408 |
100% |
8300376476 |
100% |
| Mapped |
118015321 |
98.85 % |
8195869864 |
98.74 % |
| Passed |
66212992 |
55.46 % |
4258892860 |
51.31 % |
| NotPassed |
51802329 |
43.39 % |
3936977004 |
47.43 % |
| |
|
|
|
|
| LowMAPQ |
29652248 |
24.84 % |
2253570848 |
27.15 % |
| MateUnmapped |
1375087 |
1.15 % |
104506612 |
1.26 % |
| Duplicate |
20840667 |
17.46 % |
1583890692 |
19.08 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
4244 |
0.00 % |
322544 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1305170 |
1.09 % |
99192920 |
1.20 % |
| Unmapped |
1375087 |
1.15 % |
104506612 |
1.26 % |
Base Level Counts
| Bases |
# |
% |
| Total |
4794425496 |
100% |
| Passed |
3858313419 |
80.47 % |
| Trimmed |
278045120 |
5.80 % |
| Clipped |
12719875 |
0.27 % |
| Overlapping |
522812761 |
10.90 % |
| LowQuality |
122534321 |
2.56 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |